Strawberry Genome And Resource Database ENtry
Blast Search
STEP 1 - Select your databases
nucleotide databases protein databases
Genome CDS PEP
F. x ananassa Reference FANhybrid_r1.2 FANhybrid_r1.2_cds FANhybrid_r1.2_pep
F. x ananassa FAN_r1.1 FAN_r1.1_cds FAN_r1.1_pep
F. iinumae FII_r1.1 FII_r1.1_cds FII_r1.1_pep
F. nipponica FNI_r1.1 FNI_r1.1_cds FNI_r1.1_pep
F. nubicola FNU_r1.1 FNU_r1.1_cds FNU_r1.1_pep
F. orientalis FOR_r1.1 FOR_r1.1_cds FOR_r1.1_pep
F.vesca (GDR)* F.vesca_v1.1 F.vesca_v1.0_cds F.vesca_v1.0_pep
F.vesca_v2.0.a1 F.vesca_v2.0.a1_cds F.vesca_v2.0.a1_pep

* Simultaneous select is not available

STEP 2 - Enter your input sequence
(FASTA format recommended.)
STEP 3 - Set your parameters
Search program
BLASTN (search nucleotide databases using a nucleotide query.)
BLASTP (search protein databases using a protein query.)
BLASTX (search protein databases using a translated nucleotide query.)
TBLASTN (search translated nucleotide databases using a protein query.)
TBLASTX (search translated nucleotide databases using a translated nucleotide query.)

Number of search results
one-line descriptions will be reported:
alignments will be reported:

Advanced settings
Filter query sequence (DUST with blastn, SEG with others)
Perform gapped alignment
Expectation value

Sequence cut
Extract Kb upstream and downstream sequences from the hit region.