Reference | Illumina assembled genome | GDR | |||||||
F. × ananassa | F. iinumae | F. nipponica | F. nubicola | F. orientalis | F. vesca | ||||
FANhybrid_r1.2 | FAN_r1,1 | FII_r1.1 | FNI_r1.1 | FNU_r1.1 | FOR_r1,1 | Pseudomolecule (v1.1) | |||
Total | Number of sequences | 211,588 | 625,966 | 117,822 | 215,024 | 210,780 | 323,163 | 8 | |
Total length (bp) | 173,229,572 | 697,765,214 | 199,627,645 | 206,414,979 | 203,686,576 | 214,184,046 | 206,888,733 | ||
Average length (bp) | 819 | 1,115 | 1,694 | 960 | 966 | 663 | 25,861,092 | ||
Max length (bp) | 348,406 | 51,398 | 36,387 | 32,113 | 27,253 | 12,564 | 39,347,595 | ||
N50 length (bp) | 5,137 | 2,201 | 3,309 | 1,275 | 1,291 | 722 | 27,214,542 | ||
Total | A | 47,398,175 | 201,607,452 | 60,846,197 | 63,581,246 | 62,914,664 | 66,367,041 | 59,404,511 | |
T | 47,314,079 | 201,232,679 | 60,764,847 | 63,483,905 | 62,877,129 | 66,179,649 | 59,375,033 | ||
G | 29,454,229 | 127,672,886 | 38,950,399 | 39,626,127 | 38,930,937 | 40,738,935 | 36,921,754 | ||
C | 29,542,534 | 127,932,068 | 39,045,461 | 39,709,257 | 38,949,864 | 40,883,595 | 36,977,283 | ||
N | 19,520,555 | 39,320,129 | 20,741 | 14,444 | 13,982 | 14,826 | 14,210,152 | ||
Total | 153,709,017 | 658,445,085 | 199,606,904 | 206,400,535 | 203,672,594 | 214,169,220 | 192,678,581 | ||
G+C% | 38.4 | 38.8 | 39.1 | 38.4 | 38.2 | 38.1 | 38.4 | ||
300bp≥ | Number of sequences | 79,439 | 625,966 | 117,822 | 215,024 | 210,780 | 323,163 | 8 | |
Total length (bp) | 146,173,335 | 697,765,214 | 199,627,645 | 206,414,979 | 203,686,576 | 214,184,046 | 206,888,733 | ||
Average length (bp) | 1,840 | 1,115 | 1,694 | 960 | 966 | 663 | 25,861,092 | ||
500bp≥ | Number of sequences | 42,964 | 340,563 | 84,568 | 129,939 | 127,944 | 159,924 | 8 | |
Total length (bp) | 132,337,235 | 589,133,472 | 186,794,933 | 173,754,202 | 171,853,709 | 151,498,081 | 206,888,733 | ||
Average length (bp) | 3,080 | 1,730 | 2,209 | 1,337 | 1,343 | 947 | 25,861,092 | ||
1Kbp≥ | Number of sequences | 16,548 | 157,593 | 50,788 | 54,873 | 54,695 | 44,526 | 8 | |
Total length (bp) | 114,308,436 | 464,659,328 | 162,880,190 | 121,549,164 | 120,836,691 | 72,730,780 | 206,888,733 | ||
Average length (bp) | 6,908 | 2,948 | 3,207 | 2,215 | 2,209 | 1,633 | 25,861,092 | ||
5Kbp≥ | Number of sequences | 2,752 | 18,577 | 8,642 | 3,473 | 3,394 | 439 | 8 | |
Total length (bp) | 86,959,878 | 151,909,251 | 70,997,106 | 25,838,925 | 25,032,229 | 2,735,326 | 206,888,733 | ||
Average length (bp) | 31,599 | 8,177 | 8,215 | 7,440 | 7,375 | 6,231 | 25,861,09 |